Basic Information
Locus ID:
populus_peu31165
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7007391 | 7009979 | + | populus_peu31165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 36,744.70 Da | 52.45 | 81.32 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 275 | 0.017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 153 | 184 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 20 | 286 | 4.23E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 324 | 2.6E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 146 | 184 | 2.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 275 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 143 | 0.82 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 278 | 9.045603 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 278 | 10.775796 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 262 | 276 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_011003601.1 | PREDICTED: WD repeat-containing protein LWD1 [Populus euphratica] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2ZKZ2 | WD_REPEATS_REGION domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_005775 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology