Basic Information
Locus ID:
populus_peu30918
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2108678 | 2116598 | - | populus_peu30918 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 85,558.18 Da | 51.61 | 68.28 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 502 | 779 | 9.28857E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 579 | 616 | 8.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 541 | 572 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 661 | 696 | 0.0017 | IPR001680 |
| Pfam | PF08513 | LisH | 11 | 36 | 2.2E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 744 | 779 | 0.0079 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 503 | 530 | 4.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 495 | 779 | 1.81E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 339 | 625 | 2.2E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 626 | 779 | 1.1E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 533 | 572 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 740 | 779 | 7.5E-5 | IPR001680 |
| SMART | SM00667 | Lish | 9 | 41 | 0.0016 | IPR006594 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 658 | 696 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 491 | 530 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 738 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 619 | 655 | 140.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 540 | 575 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 498 | 539 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 747 | 779 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 540 | 575 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 583 | 625 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 747 | 779 | 12.578312 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 583 | 618 | 8.57106 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 498 | 533 | 9.361965 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 9.40982 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 517 | 531 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 559 | 573 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 559 | 573 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 766 | 779 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 517 | 531 | 1.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 405 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_011024692.1 | PREDICTED: transcriptional corepressor LEUNIG-like isoform X3 [Populus euphratica] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2MXV3 | LisH domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS437349 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology