Basic Information
Locus ID:
populus_peu30903
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1944970 | 1947242 | - | populus_peu30903 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 43,688.79 Da | 62.79 | 64.46 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 349 | 386 | 1.86573E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 347 | 390 | 3.2E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 348 | 393 | 2.07E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 322 | 397 | 1.1E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 349 | 386 | 7.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 349 | 387 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 339 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011024653.1 | PREDICTED: uncharacterized protein LOC105125764 isoform X1 [Populus euphratica] | 0 |
| TrEMBL | A0A2K2BNW0 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G243800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology