Basic Information
Locus ID:
populus_peu30771
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 692353 | 707962 | - | populus_peu30771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 214,551.48 Da | 41.55 | 105.69 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1256 | 1476 | 8.49309E-113 | - |
| CDD | cd05271 | NDUFA9_like_SDR_a | 1564 | 1846 | 8.91922E-103 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 939 | 1233 | 1.48943E-95 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 327 | 586 | 1.08604E-82 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 612 | 813 | 1.97806E-103 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 941 | 1183 | 2.0E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1275 | 1423 | 2.3E-30 | IPR003439 |
| Pfam | PF05368 | NmrA-like family | 1567 | 1796 | 3.5E-9 | IPR008030 |
| Pfam | PF00005 | ABC transporter | 631 | 765 | 3.9E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 395 | 566 | 1.8E-17 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1249 | 1488 | 8.09E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 315 | 594 | 1.44E-29 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 938 | 1241 | 3.14E-51 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 607 | 835 | 5.91E-55 | IPR027417 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1565 | 1839 | 7.06E-43 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 1566 | 1820 | 3.8E-35 | - |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 295 | 595 | 1.2E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1242 | 1494 | 5.1E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 607 | 841 | 3.7E-71 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 900 | 1238 | 3.3E-59 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1284 | 1469 | 3.8E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 640 | 821 | 6.2E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 941 | 1211 | 36.436531 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 612 | 836 | 23.035986 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 329 | 578 | 26.581573 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1258 | 1492 | 17.967318 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 738 | 752 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 911 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_011024496.1 | PREDICTED: ABC transporter C family member 5 [Populus euphratica] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803PGG4 | ABC-type xenobiotic transporter OS=Cannabis sativa OX=3483 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology