Basic Information
Locus ID:
populus_peu30629
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 19743347 | 19747350 | - | populus_peu30629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 95,762.18 Da | 41.23 | 75.51 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 347 | 391 | 1.3E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 293 | 336 | 1.7E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 232 | 276 | 7.0E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 176 | 222 | 3.7E-9 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 28 | 122 | 1.99E-10 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 143 | 233 | 6.28E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 422 | 506 | 7.98E-11 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 258 | 336 | 3.14E-12 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 314 | 405 | 7.33E-18 | - |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 352 | 399 | 8.6792 | IPR002219 |
| Coils | Coil | Coil | 771 | 805 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11550.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_042939090.1 | uncharacterized protein LOC122274172 [Carya illinoinensis] | 0 |
| TrEMBL | A0A8T1Q7A1 | Phorbol-ester/DAG-type domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_06G031800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |