Basic Information
Locus ID:
populus_peu30619
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 19678785 | 19684247 | - | populus_peu30619 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 55,228.51 Da | 44.79 | 81.74 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 2.5E-17 | IPR020683 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 220 | 261 | 2.0E-6 | - |
| Pfam | PF00023 | Ankyrin repeat | 178 | 206 | 0.01 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 274 | 1.04E-46 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 375 | 8.03E-8 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 146 | 270 | 2.1E-20 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 145 | 8.2E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 5.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 1.3 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 0.0025 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 1.2E-4 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.435407 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.203901 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 252 | 11.14024 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 205 | 9.277257 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.31873 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.985412 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 10.68342 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 9.93829 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.00344 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 479 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_011030078.1 | PREDICTED: E3 ubiquitin-protein ligase XBAT33-like isoform X1 [Populus euphratica] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2XI07 | RING-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_021835 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology