Basic Information
Locus ID:
populus_peu30617
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 19666097 | 19670324 | - | populus_peu30617 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 137,582.00 Da | 30.66 | 108.10 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 213 | 235 | 1.4 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 992 | 1260 | 4.0E-44 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 722 | 741 | 1.6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 73 | 129 | 2.3E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 523 | 578 | 1.9E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 648 | 708 | 6.3E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 773 | 830 | 4.6E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 66 | 5.5E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 364 | 581 | 1.25E-46 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 359 | 4.42E-54 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 968 | 1260 | 1.62E-77 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 589 | 880 | 2.04E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 586 | 889 | 2.0E-87 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 206 | 357 | 9.5E-39 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 950 | 1063 | 5.7E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 358 | 585 | 1.8E-62 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1064 | 1266 | 3.2E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 205 | 5.0E-47 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 116 | 140 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 92 | 115 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 599 | 623 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 647 | 671 | 2.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 545 | 569 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 817 | 841 | 62.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 331 | 354 | 240.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 647 | 679 | 37.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 719 | 742 | 77.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 283 | 304 | 93.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 92 | 118 | 37.0 | - |
| SMART | SM00220 | serkin_6 | 988 | 1260 | 9.9E-30 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 545 | 566 | 350.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 817 | 840 | 150.0 | - |
| SMART | SM00369 | LRR_typ_2 | 188 | 211 | 5.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 719 | 743 | 9.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 695 | 718 | 370.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 743 | 762 | 680.0 | - |
| SMART | SM00369 | LRR_typ_2 | 283 | 307 | 65.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 988 | 1263 | 37.813408 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 994 | 1017 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1110 | 1122 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_011012372.1 | PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Populus euphratica] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | B9I4B2 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G139000 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |