Basic Information
Locus ID:
populus_peu30598
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 19522969 | 19525566 | - | populus_peu30598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 22,724.61 Da | 41.29 | 59.13 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 160 | 202 | 1.14836E-15 | - |
| Pfam | PF13639 | Ring finger domain | 160 | 202 | 4.0E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 206 | 8.39E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 207 | 1.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 161 | 201 | 9.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 161 | 202 | 10.969719 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 100 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52155.1 | - | 0 |
| RefSeq | XP_011030196.1 | PREDICTED: uncharacterized protein LOC105129712 [Populus euphratica] | 0 |
| Q91XF4 | E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3N7FUF9 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G136400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07225.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g028480.2N |
| Salicaceae | Populus euphratica | 1 | populus_peu30598 |