Basic Information
Locus ID:
populus_peu30584
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 19438509 | 19442261 | + | populus_peu30584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 44,041.01 Da | 28.01 | 77.26 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18044 | CCCH-type zinc finger | 125 | 145 | 1.1E-6 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 297 | 312 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 155 | 191 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 317 | 351 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 124 | 146 | 1.46E-5 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 143 | 401 | 3.34E-42 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 16 | 69 | 4.2E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 125 | 402 | 3.2E-43 | IPR015943 |
| SMART | SM00320 | WD40_4 | 315 | 352 | 4.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 399 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 312 | 0.0087 | IPR001680 |
| SMART | SM00320 | WD40_4 | 231 | 268 | 2.6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 123 | 147 | 0.016 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 41 | 64 | 0.77 | IPR000571 |
| SMART | SM00320 | WD40_4 | 152 | 191 | 1.9E-5 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 122 | 148 | 12.652377 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 200 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 191 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 282 | 321 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 282 | 315 | 8.887423 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 39 | 65 | 9.920149 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 299 | 313 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 299 | 313 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 178 | 192 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 339 | 353 | 1.5E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_011030043.1 | PREDICTED: zinc finger CCCH domain-containing protein 48 [Populus euphratica] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | B9I4E6 | Zinc finger CCCH domain-containing protein 48-like OS=Populus trichocarpa OX=3694 GN=POPTR_012G134800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology