Basic Information
Locus ID:
populus_peu30519
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 18833522 | 18835739 | + | populus_peu30519 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 13,712.78 Da | 35.43 | 94.23 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 26 | 120 | 1.5E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 24 | 121 | 4.58E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 8 | 123 | 1.2E-48 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 26 | 120 | 2.8E-37 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 23 | 121 | 9.0E-40 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 48 | 63 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 81 | 95 | 2.3E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 24 | 37 | 2.3E-14 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 59 | 74 | 2.3E-14 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 22 | 121 | 18.785381 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_011029971.1 | PREDICTED: 40S ribosomal protein S20-1 [Populus euphratica] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | A9PAL8 | Ribosomal_S10 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G128300 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology