Basic Information
Locus ID:
populus_peu30502
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 18723898 | 18725539 | - | populus_peu30502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 35,712.18 Da | 49.43 | 79.42 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 197 | 238 | 1.07524E-23 | - |
| Pfam | PF13639 | Ring finger domain | 196 | 238 | 2.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 242 | 3.31E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 243 | 1.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 237 | 7.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 238 | 12.208971 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011029952.1 | PREDICTED: uncharacterized protein LOC105129538 [Populus euphratica] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | B9I4M6 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G126700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology