Basic Information
Locus ID:
populus_peu30273
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 16836504 | 16838638 | + | populus_peu30273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 64,428.83 Da | 42.09 | 103.90 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 36 | 74 | 2.4E-9 | IPR001810 |
| Pfam | PF07723 | Leucine Rich Repeat | 196 | 220 | 0.0015 | IPR013101 |
| SUPERFAMILY | SSF81383 | F-box domain | 32 | 100 | 2.09E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 153 | 484 | 2.86E-15 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 34 | 75 | 1.7E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 143 | 468 | 5.7E-16 | IPR032675 |
| SMART | SM00256 | fbox_2 | 40 | 80 | 2.7E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 34 | 83 | 10.875178 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03220.1 | Protein with RNI-like/FBD-like domains. | 0 |
| RefSeq | XP_011044121.1 | PREDICTED: FBD-associated F-box protein At4g10400-like [Populus euphratica] | 0 |
| Q9ZR09 | Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana OX=3702 GN=At4g03220 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X8C8Y0 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_043279 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology