Basic Information
Locus ID:
populus_peu30257
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 16707962 | 16709545 | - | populus_peu30257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 39,441.84 Da | 48.50 | 83.88 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 288 | 327 | 1.2E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 283 | 333 | 3.31E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 73 | 1.83E-7 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 79 | 196 | 2.09E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 274 | 332 | 9.3E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 61 | 235 | 4.4E-20 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 285 | 327 | 10.963152 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_011044148.1 | PREDICTED: F-box protein At5g50450-like [Populus euphratica] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2XLC7 | MYND-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_022196 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology