Basic Information
Locus ID:
populus_peu30181
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Sieve element occlusion C-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 16084053 | 16088040 | + | populus_peu30181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 80,531.05 Da | 36.27 | 92.49 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14577 | Sieve element occlusion C-terminus | 498 | 680 | 5.7E-67 | IPR027944 |
| Pfam | PF14576 | Sieve element occlusion N-terminus | 26 | 106 | 2.8E-11 | IPR027942 |
| Pfam | PF14576 | Sieve element occlusion N-terminus | 131 | 335 | 7.4E-53 | IPR027942 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 346 | 492 | 5.4E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 712 | - | - |
| Coils | Coil | Coil | 570 | 590 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01680.1 | 0 | |
| RefSeq | XP_011040448.1 | PREDICTED: uncharacterized protein LOC105136707 [Populus euphratica] | 0 |
| Q9SS87 | Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2XIU3 | Protein SIEVE ELEMENT OCCLUSION B-like OS=Populus deltoides OX=3696 GN=H0E87_022255 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13002, jg18811, jg25957, jg27538 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6546 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028459, Ah034611 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26683, Sbi_jg33879 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15195 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011790 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73994, Sgl77499 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000038071, gene:ENSEOMG00000038884 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0010460, CQ.Regalona.r1.7AG0008820 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30140350 |
| Arecaceae | Cocos nucifera | 8 | scaffold000478G000060, scaffold000478G000080 ... |
| Arecaceae | Phoenix dactylifera | 8 | gene-LOC103709938, gene-LOC103709979, gene-LOC103717007 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.888.V1.1, AsparagusV1_09.1078.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G08844, Ftri18G01571, Ftri1G34113, Ftri9G25433 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G31880.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016374m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14230.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g012260.2N, BniB08g019940.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1861 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2029 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g01740 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g02390 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11513 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.996 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019678 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26891 |
| Poaceae | Echinochloa crus-galli | 1 | CH07.1052 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0517720, gene-QOZ80_6BG0469670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0672740.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_029528 |
| Poaceae | Oryza coarctata | 2 | Oco11G007570, Oco12G007560 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g18000.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G019000, gene-BS78_10G121900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Ctg00257 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G017670 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G090400, Tel7E01G390700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG027320, gene_TRIDC7BG018040 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G215800.1.cds1, TraesCS7B02G122800.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb380860_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-45596, nbis-gene-54022, nbis-gene-59232 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g29515, Zma_g31762, Zma_g31763 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1124, evm.TU.LG12.603 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g07860, gene.Posoc05g07880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1098, evm.TU.Scaffold_4_RagTag.411 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14779, nbisL1-mrna-28964 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19146, nbisL1-mrna-21160 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12648, nbisL1-mrna-1913 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.89, add.evm.TU.utg000010l.59 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000141, Maker00009060 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17030, nbisL1-mrna-22654 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1402, nbisL1-mrna-8730 |
| Salicaceae | Populus euphratica | 3 | populus_peu28759, populus_peu30181, populus_peu30182 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132601734, gene-LOC132632556 |
| Solanaceae | Solanum chilense | 2 | SOLCI002627000, SOLCI004735700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015468, gene-LOC107021528 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19928_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2559 |
| Zosteraceae | Zostera marina | 1 | Zosma04g02530.v3.1 |