Basic Information
Locus ID:
populus_peu30123
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 15326117 | 15362915 | - | populus_peu30123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 49,683.17 Da | 44.61 | 72.56 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 25 | 332 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 39 | 330 | 3.9E-84 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 20 | 385 | 9.11E-124 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 18 | 393 | 9.3E-135 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 6 | 439 | 5.1E-203 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 150 | 173 | 3.3E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 267 | 277 | 3.3E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 182 | 197 | 3.3E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 228 | 241 | 1.1E-58 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 41 | 58 | 1.1E-58 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 107 | 124 | 1.1E-58 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 128 | 148 | 1.1E-58 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 74 | 92 | 1.1E-58 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 169 | 185 | 1.1E-58 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 245 | 263 | 1.1E-58 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 426 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_002318661.1 | histone deacetylase 6 [Populus trichocarpa] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7YZQ4 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_042098 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology