Basic Information
Locus ID:
populus_peu30018
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 13657725 | 13661779 | - | populus_peu30018 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 77,376.43 Da | 28.62 | 92.52 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 12 | 257 | 1.13948E-39 | - |
| Pfam | PF04053 | Coatomer WD associated region | 443 | 574 | 1.0E-42 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 3.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 181 | 216 | 1.8E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 281 | 382 | 5.8E-13 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 171 | 2.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 255 | 4.68E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 93 | 5.6E-26 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 458 | 618 | 1.2E-51 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 98 | 259 | 1.6E-49 | IPR015943 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 216 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 9.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 257 | 170.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 174 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 225 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 184 | 217 | 12.156496 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 79 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 79 | 12.446706 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 66 | 80 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 203 | 217 | 1.6E-5 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_002318013.1 | coatomer subunit alpha-1 [Populus trichocarpa] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7YR67 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_043092 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology