Basic Information
Locus ID:
populus_peu29997
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 13398837 | 13404994 | + | populus_peu29997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 134,029.56 Da | 33.54 | 90.50 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 16 | 295 | 7.21904E-68 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 62 | 99 | 4.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 219 | 254 | 3.4E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 319 | 746 | 1.2E-131 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 21 | 57 | 3.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 209 | 5.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 104 | 141 | 1.7E-7 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 793 | 1198 | 6.1E-173 | IPR010714 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 17 | 293 | 3.66E-66 | IPR036322 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 214 | 526 | 1.73E-14 | IPR011048 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 297 | 2.9E-111 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 618 | 790 | 1.8E-63 | - |
| SMART | SM00320 | WD40_4 | 171 | 210 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 254 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 102 | 141 | 7.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 18 | 57 | 4.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 295 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 60 | 99 | 2.5E-8 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 16 | 1194 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 109 | 142 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 25 | 66 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 222 | 263 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 222 | 255 | 12.156496 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 178 | 219 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 109 | 142 | 12.631039 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 25 | 57 | 10.363778 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 178 | 212 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 67 | 99 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 67 | 108 | 13.549507 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 128 | 142 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 241 | 255 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 128 | 142 | 2.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 86 | 100 | 2.1E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_011042646.1 | PREDICTED: coatomer subunit alpha-1-like isoform X1 [Populus euphratica] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8CH08 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_042033 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology