Basic Information
Locus ID:
populus_peu29939
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 11892210 | 11893865 | - | populus_peu29939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 30,565.61 Da | 49.72 | 106.99 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 47 | 86 | 1.5E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 105 | 1.45E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 138 | 3.5E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 47 | 102 | 10.025527 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 66 | 75 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011013231.1 | PREDICTED: uncharacterized protein LOC105117315 isoform X2 [Populus euphratica] | 0 |
| TrEMBL | B9I2W9 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G067200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology