Basic Information
Locus ID:
populus_peu29707
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 3862725 | 3867715 | - | populus_peu29707 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 54,289.72 Da | 45.87 | 62.03 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 431 | 457 | 1.9E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 268 | 292 | 2.7E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 368 | 391 | 2.1E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 307 | 331 | 9.6E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 263 | 294 | 5.49E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 363 | 396 | 1.13E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 303 | 332 | 9.02E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 429 | 460 | 2.6E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 260 | 297 | 7.2E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 359 | 397 | 1.4E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 398 | 428 | 5.0E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 301 | 335 | 3.0E-12 | - |
| SMART | SM00547 | zf_4 | 400 | 424 | 0.064 | IPR001876 |
| SMART | SM00547 | zf_4 | 270 | 294 | 1.0E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 369 | 393 | 1.3E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 309 | 333 | 2.1E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 431 | 455 | 0.085 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 398 | 427 | 9.551712 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 428 | 458 | 9.675926 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 307 | 331 | 9.382329 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 268 | 297 | 9.529128 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 367 | 396 | 10.556718 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 433 | 452 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 402 | 421 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 371 | 390 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 311 | 330 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_011039141.1 | PREDICTED: zinc finger protein VAR3, chloroplastic isoform X3 [Populus euphratica] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6M2F6N3 | Zinc finger protein VAR3, chloroplastic OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology