Basic Information
Locus ID:
populus_peu29668
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 3329654 | 3331393 | + | populus_peu29668 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 49,349.61 Da | 45.34 | 103.44 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 27 | 69 | 5.20102E-25 | - |
| Pfam | PF04564 | U-box domain | 23 | 94 | 4.0E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 200 | 417 | 4.32E-14 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 22 | 99 | 1.15E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 100 | 5.9E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 122 | 417 | 7.3E-16 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 26 | 89 | 2.3E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 22 | 96 | 37.764061 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_011003764.1 | PREDICTED: U-box domain-containing protein 21-like [Populus euphratica] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | B9I4T7 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_012G042600 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology