Basic Information
Locus ID:
populus_peu29505
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 1803128 | 1805649 | + | populus_peu29505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 41,795.48 Da | 55.10 | 86.09 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 322 | 365 | 8.43515E-16 | - |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 152 | 227 | 2.6E-9 | IPR032872 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 29 | 96 | 1.1E-16 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 321 | 365 | 6.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 368 | 2.04E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 369 | 2.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 323 | 364 | 6.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 323 | 365 | 12.164712 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011001897.1 | PREDICTED: putative RING-H2 finger protein ATL21A [Populus euphratica] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7YMZ3 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_041688 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology