Basic Information
Locus ID:
populus_peu29401
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 861823 | 865798 | - | populus_peu29401 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 123,899.91 Da | 39.48 | 103.74 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 824 | 1087 | 1.4E-44 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 219 | 272 | 1.5E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 357 | 416 | 4.3E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 504 | 561 | 7.9E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 341 | 710 | 3.53E-66 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 56 | 226 | 5.58E-20 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 169 | 421 | 1.73E-45 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 807 | 1090 | 1.75E-69 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 188 | 304 | 8.1E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 187 | 1.3E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 305 | 428 | 3.0E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 429 | 743 | 7.4E-86 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 781 | 892 | 6.0E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 893 | 1114 | 9.0E-59 | - |
| SMART | SM00369 | LRR_typ_2 | 596 | 619 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 98 | 120 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 548 | 572 | 5.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 235 | 258 | 46.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 820 | 1091 | 4.1E-36 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 355 | 379 | 6.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 259 | 283 | 8.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 669 | 693 | 230.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 820 | 1100 | 37.191513 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 938 | 950 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 826 | 850 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73080.1 | PEP1 receptor 1. Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. | 0 |
| RefSeq | XP_011043712.1 | PREDICTED: LOW QUALITY PROTEIN: LRR receptor-like serine/threonine-protein kinase GSO2 [Populus euphratica] | 0 |
| Q9SSL9 | Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana OX=3702 GN=PEPR1 PE=1 SV=1 | 0 | |
| TrEMBL | B9I228 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G022800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2137 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30166990 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711259, gene-LOC120108963 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1110.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1251 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011074, Pov_00034559 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2526, AH01.2527, BH01.2855, BH01.2857, CH01.3064 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0120090, gene-QOZ80_2AG0120110 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0108800.1, HORVU.MOREX.r3.5HG0480440.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005384, gene-QYE76_045167, gene-QYE76_045217 |
| Poaceae | Oryza coarctata | 2 | Oco20G001010, Oco20G001020 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g06740.1, LOC_Os10g06760.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G254700, gene-BS78_01G254800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0301897, Pt_Chr0301916, Pt_Chr0301917, Pt_Chr0701996 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G016710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G197400, Tel5E01G350100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG010300, gene_TRIDC5AG034110 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G090100.1.cds1, TraesCS2B02G105800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb026550_P001, Zm00001eb034800_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42998 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13073 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g08480 |
| Salicaceae | Populus euphratica | 1 | populus_peu29401 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132631233, gene-LOC132632151, gene-LOC132632152 |
| Solanaceae | Solanum chilense | 2 | SOLCI004878800, SOLCI004878900 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26240.v3.1 |