Basic Information
Locus ID:
populus_peu29257
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 21381345 | 21386537 | - | populus_peu29257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 55,082.47 Da | 45.12 | 80.74 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 3.0E-17 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 178 | 207 | 6.9E-5 | IPR002110 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 220 | 261 | 3.5E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 375 | 7.06E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 274 | 1.19E-47 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 144 | 270 | 2.2E-21 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 303 | 388 | 2.4E-5 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 143 | 2.4E-30 | IPR036770 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 7.9E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 301 | 331 | 2800.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 2.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 1.7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 9.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 1.5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.065006 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 10.418106 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 13.89137 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 11.11353 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 12.7794 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 10.311981 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.568184 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 252 | 10.36565 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.08357 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_011048674.1 | PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Populus euphratica] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | B9ID59 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G141400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology