Basic Information
Locus ID:
populus_peu29255
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 21363985 | 21369534 | - | populus_peu29255 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 125,769.40 Da | 28.91 | 108.52 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 611 | 670 | 2.5E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 122 | 180 | 2.0E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 904 | 1148 | 5.2E-37 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 563 | 582 | 1.5 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 687 | 744 | 3.1E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 407 | 466 | 1.8E-6 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 881 | 1150 | 2.16E-69 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 65 | 277 | 6.23E-41 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 246 | 496 | 1.02E-55 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 504 | 794 | 1.93E-63 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 47 | 241 | 2.7E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 973 | 1156 | 1.1E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 505 | 802 | 6.4E-87 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 863 | 972 | 1.8E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 242 | 504 | 2.1E-78 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 143 | 166 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 609 | 632 | 60.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 167 | 191 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 707 | 731 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 513 | 537 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 100 | 124 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 429 | 453 | 68.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 633 | 656 | 88.0 | - |
| SMART | SM00369 | LRR_typ_2 | 561 | 585 | 0.62 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 731 | 757 | 510.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 143 | 169 | 24.0 | - |
| SMART | SM00220 | serkin_6 | 901 | 1150 | 1.5E-23 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 561 | 593 | 30.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 405 | 431 | 720.0 | - |
| SMART | SM00369 | LRR_typ_2 | 633 | 657 | 13.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 100 | 127 | 370.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 657 | 679 | 330.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 453 | 479 | 340.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 901 | 1156 | 31.73579 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 563 | 585 | 7.057395 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 907 | 930 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1000 | 1012 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 456 | 469 | 3.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 561 | 574 | 3.5E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_011048672.1 | PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Populus euphratica] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | B9ID57 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G141200 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |