Basic Information
Locus ID:
populus_peu29237
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 21260863 | 21265260 | - | populus_peu29237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 14,844.34 Da | 51.75 | 55.56 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 88 | 130 | 1.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 133 | 2.56E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 134 | 7.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 89 | 129 | 0.0012 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 89 | 130 | 10.645153 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52155.1 | - | 0 |
| RefSeq | XP_011041607.1 | PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Populus euphratica] | 0 |
| TrEMBL | A9PJG0 | RING-type domain-containing protein OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology