Basic Information
Locus ID:
populus_peu28999
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 19431841 | 19434102 | + | populus_peu28999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 43,840.12 Da | 42.92 | 78.80 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 76 | 365 | 1.0865E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 149 | 180 | 0.017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 109 | 144 | 0.27 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 196 | 254 | 1.7E-4 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 364 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 72 | 366 | 1.07E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 16 | 368 | 2.5E-106 | IPR015943 |
| SMART | SM00320 | WD40_4 | 279 | 323 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 147 | 184 | 0.0064 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 227 | 4.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 59 | 100 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 365 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 105 | 144 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 276 | 0.001 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 333 | 366 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 112 | 153 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 333 | 366 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 195 | 236 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 195 | 227 | 10.284687 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 352 | 366 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27570.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011040316.1 | PREDICTED: cell division cycle 20.5, cofactor of APC complex-like [Populus euphratica] | 0 |
| Q3E906 | Cell division cycle 20.5, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-5 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2K1XLF8 | ANAPC4_WD40 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G110300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology