Basic Information
Locus ID:
populus_peu28876
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 18521874 | 18529696 | + | populus_peu28876 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.92 | 23,871.06 Da | 63.55 | 79.46 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 70 | 3.35034E-38 | IPR033896 |
| Pfam | PF01486 | K-box region | 83 | 170 | 1.1E-22 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.3E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 87 | 8.5E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 77 | 2.7E-26 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 7.4E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 178 | 13.522584 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.748983 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.7E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.7E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.7E-29 | IPR002100 |
| Coils | Coil | Coil | 86 | 113 | - | - |
| Coils | Coil | Coil | 123 | 169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.2 | - | 0 |
| RefSeq | XP_011023983.1 | PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1 [Populus euphratica] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6M2EDG7 | MADS-box transcription factor OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology