Basic Information
Locus ID:
populus_peu28854
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 18399180 | 18400467 | - | populus_peu28854 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 39,506.95 Da | 43.58 | 88.83 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 286 | 325 | 6.0E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 279 | 331 | 1.22E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 81 | 199 | 1.24E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 82 | 8.24E-7 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 63 | 232 | 3.4E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 273 | 332 | 2.3E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 283 | 325 | 10.963152 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_011024013.1 | PREDICTED: F-box protein At5g50450-like [Populus euphratica] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | B9IFB6 | MYND-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G096200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology