Basic Information
Locus ID:
populus_peu28741
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 17376574 | 17377891 | - | populus_peu28741 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 48,024.84 Da | 55.23 | 91.56 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 112 | 144 | 0.0039465 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 291 | 397 | 7.4E-19 | IPR001245 |
| Pfam | PF01476 | LysM domain | 108 | 145 | 2.4E-5 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 246 | 422 | 6.18E-27 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 260 | 427 | 7.8E-28 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 89 | 151 | 6.7E-7 | IPR036779 |
| SMART | SM00219 | tyrkin_6 | 263 | 428 | 1.6E-4 | IPR020635 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 100 | 144 | 9.531601 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 184 | 428 | 16.032915 | IPR000719 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21630.1 | chitin elicitor receptor kinase 1. LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. | 0 |
| RefSeq | XP_011046255.1 | PREDICTED: protein LYK5-like [Populus euphratica] | 0 |
| A8R7E6 | Chitin elicitor receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CERK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2X0U1 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_025735 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg18800, jg18801, jg8243 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30058330, pistato.v30140100 |
| Apiaceae | Apium graveolens | 2 | Ag5G00714, Ag6G02262 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010430 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695735 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1584.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G17600, Ftri12G19165 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014588 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.389 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24355, nbisL1-mrna-24447 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13610 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19655 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.147 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18995 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11876 |
| Salicaceae | Populus euphratica | 4 | populus_peu28725, populus_peu28732, populus_peu28741 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599446, gene-LOC132600290 |
| Solanaceae | Solanum chilense | 1 | SOLCI003959800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004454 |