Basic Information
Locus ID:
populus_peu28698
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 16914776 | 16916086 | - | populus_peu28698 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 24,864.88 Da | 39.51 | 78.25 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 39 | 217 | 2.0E-46 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 20 | 217 | 1.87E-65 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 18 | 222 | 1.5E-69 | IPR037138 |
| PRINTS | PR01271 | Histone deacetylase signature | 74 | 92 | 5.8E-46 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 169 | 185 | 5.8E-46 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 128 | 148 | 5.8E-46 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 41 | 58 | 5.8E-46 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 182 | 197 | 9.4E-19 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 150 | 173 | 9.4E-19 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 107 | 124 | 5.8E-46 | IPR003084 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_034925914.1 | histone deacetylase 6-like [Populus alba] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8C9G5 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_050573 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology