Basic Information
Locus ID:
populus_peu28609
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 15895983 | 15897110 | + | populus_peu28609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 41,281.39 Da | 45.32 | 77.41 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 141 | 184 | 1.5149E-18 | - |
| Pfam | PF13639 | Ring finger domain | 141 | 184 | 4.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 188 | 2.35E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 189 | 7.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 142 | 183 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 142 | 184 | 11.972923 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011028596.1 | PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K1XJG4 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G073600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology