Basic Information
Locus ID:
populus_peu28573
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 15441262 | 15445653 | + | populus_peu28573 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 113,600.75 Da | 35.90 | 90.53 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 2 | 253 | 7.6485E-60 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 87 | 124 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 82 | 3.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 212 | 2.8E-5 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 729 | 817 | 3.6E-25 | IPR010714 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 845 | 883 | 1.6E-8 | IPR010714 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 914 | 1011 | 8.6E-30 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 6 | 40 | 5.3E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 278 | 704 | 1.8E-133 | IPR006692 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 172 | 483 | 2.04E-14 | IPR011048 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 251 | 1.92E-57 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 576 | 739 | 1.9E-61 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 255 | 1.3E-93 | IPR015943 |
| SMART | SM00320 | WD40_4 | 43 | 82 | 2.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 85 | 124 | 7.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 40 | 9.2E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 50 | 82 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 92 | 125 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 8 | 40 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 50 | 91 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 213 | 12.156496 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 8 | 49 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 92 | 125 | 12.631039 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 111 | 125 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 111 | 125 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 69 | 83 | 1.3E-7 | IPR020472 |
| Coils | Coil | Coil | 925 | 945 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_052188785.1 | coatomer subunit alpha-1 [Diospyros lotus] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A834G8B8 | Coatomer subunit alpha OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim11G0182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology