Basic Information
Locus ID:
populus_peu28547
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 15087072 | 15100180 | - | populus_peu28547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 151,046.16 Da | 56.05 | 86.56 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 46 | 179 | 1.63269E-22 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1168 | 1211 | 3.71925E-21 | - |
| CDD | cd12108 | Hr-like | 627 | 773 | 1.47563E-19 | - |
| Pfam | PF05495 | CHY zinc finger | 1040 | 1115 | 1.4E-17 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1167 | 1210 | 1.9E-6 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 46 | 181 | 2.9E-10 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1106 | 1160 | 1.7E-14 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1158 | 1216 | 9.96E-8 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1034 | 1097 | 6.8E-18 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 42 | 199 | 3.6E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1162 | 1213 | 3.4E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 622 | 821 | 2.5E-14 | - |
| SMART | SM00184 | ring_2 | 1169 | 1210 | 5.4E-4 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1033 | 1102 | 22.565708 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1169 | 1211 | 11.235273 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1105 | 1168 | 26.919901 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_011028688.1 | PREDICTED: uncharacterized protein LOC105128632 isoform X1 [Populus euphratica] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2X1F4 | Zinc finger protein OS=Populus deltoides OX=3696 GN=H0E87_025880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology