Basic Information
Locus ID:
populus_peu28069
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 1583894 | 1586380 | + | populus_peu28069 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 41,290.69 Da | 52.50 | 88.94 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 324 | 367 | 8.60478E-16 | - |
| Pfam | PF13639 | Ring finger domain | 323 | 367 | 2.7E-11 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 153 | 228 | 4.1E-8 | IPR032872 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 34 | 97 | 1.1E-16 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 369 | 2.39E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 371 | 1.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 325 | 366 | 3.2E-5 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 35 | 5.0 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 325 | 367 | 12.40076 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011003877.1 | PREDICTED: putative RING-H2 finger protein ATL21A [Populus euphratica] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K1R5G0 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_T136300 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology