Basic Information
Locus ID:
populus_peu27815
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 21772077 | 21777994 | - | populus_peu27815 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 55,504.94 Da | 23.73 | 105.62 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 362 | 2.1418E-26 | - |
| Pfam | PF00168 | C2 domain | 264 | 356 | 1.3E-21 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 3.8E-15 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 264 | 394 | 8.89E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 259 | 418 | 1.1E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 362 | 1.4E-20 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 23.498034 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 363 | 20.491903 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 511 | - | - |
| Coils | Coil | Coil | 391 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_011034774.1 | PREDICTED: synaptotagmin-5-like [Populus euphratica] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A4V6ABE6 | Calcium-dependent lipid-binding family protein OS=Populus alba OX=43335 GN=D5086_0000047000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology