Basic Information
Locus ID:
populus_peu27762
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 21373704 | 21378106 | - | populus_peu27762 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 58,668.67 Da | 34.97 | 75.68 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 280 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 407 | 441 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 368 | 402 | 2.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 242 | 532 | 1.14E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 312 | 537 | 5.7E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 226 | 296 | 3.7E-9 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 210 | 236 | 7.1 | IPR000571 |
| SMART | SM00320 | WD40_4 | 405 | 442 | 2.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 529 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 402 | 1.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 489 | 73.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 23 | 47 | 0.0059 | IPR000571 |
| SMART | SM00320 | WD40_4 | 320 | 357 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 280 | 9.5E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 372 | 405 | 10.891048 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 22 | 48 | 11.009285 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 248 | 280 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 289 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 372 | 411 | 14.084198 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 389 | 403 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 267 | 281 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 389 | 403 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 429 | 443 | 3.0E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 96 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_011035505.1 | PREDICTED: zinc finger CCCH domain-containing protein 63-like [Populus euphratica] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2K1XS36 | Zinc finger CCCH domain-containing protein 48-like OS=Populus trichocarpa OX=3694 GN=POPTR_014G077800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology