Basic Information
Locus ID:
populus_peu27566
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 19954487 | 19956584 | + | populus_peu27566 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 40,723.29 Da | 50.41 | 89.54 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 311 | 354 | 1.80067E-15 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 22 | 89 | 9.7E-18 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 159 | 221 | 2.0E-9 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 311 | 354 | 5.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 358 | 1.25E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 359 | 4.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 312 | 353 | 4.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 312 | 354 | 12.577796 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011038118.1 | PREDICTED: putative RING-H2 finger protein ATL21A isoform X2 [Populus euphratica] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K1XT57 | RING-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G098200 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology