Basic Information
Locus ID:
populus_peu27527
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 19624479 | 19628957 | + | populus_peu27527 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 84,906.86 Da | 48.89 | 104.75 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 1 | 58 | 6.5E-11 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 295 | 334 | 2.8E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 646 | 674 | 3.2E-4 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 60 | 4.33E-16 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 70 | 379 | 4.87E-29 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 644 | 762 | 2.18E-13 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 275 | 681 | 4.22E-37 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 637 | 769 | 3.0E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 62 | 4.0E-17 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 398 | 618 | 1.2E-25 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 265 | 397 | 3.9E-15 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 69 | 260 | 2.0E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 1 | 54 | 2.1E-10 | IPR003613 |
| SMART | SM00185 | arm_5 | 429 | 471 | 220.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 565 | 605 | 48.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 516 | 562 | 24.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 474 | 512 | 300.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 683 | 723 | 47.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 94 | 134 | 8.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 294 | 334 | 0.0088 | IPR000225 |
| SMART | SM00185 | arm_5 | 335 | 378 | 23.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 639 | 679 | 11.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 305 | 347 | 9.0474 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 61 | 22.540609 | IPR003613 |
| Coils | Coil | Coil | 73 | 93 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03440.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_011038724.1 | PREDICTED: U-box domain-containing protein 44-like isoform X1 [Populus euphratica] | 0 |
| TrEMBL | A0A835JEI2 | RING-type E3 ubiquitin transferase OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf14G0073300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |