HalophFGD

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Basic Information
Locus ID: populus_peu27429
Species & Taxonomic ID: Populus euphratica & 75702
Genome Assembly: GWHAAYU00000000
Description: Protein translocase subunit
Maps and Mapping Data
Chromosome Start End Strand ID
chr14 18788206 18796526 + populus_peu27429
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.07 116,577.67 Da 42.48 89.00 -0.39
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd18803 SF2_C_secA 480 741 8.70752E-69 IPR044722
CDD cd17928 DEXDc_SecA 112 474 2.25423E-130 -
Pfam PF01043 SecA preprotein cross-linking domain 312 418 4.5E-35 IPR011130
Pfam PF07517 SecA DEAD-like domain 84 462 3.3E-123 IPR011115
Pfam PF07516 SecA Wing and Scaffold domain 768 983 3.4E-53 IPR011116
SUPERFAMILY SSF81886 Helical scaffold and wing domains of SecA 771 994 1.44E-60 IPR036266
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 87 475 3.99E-73 IPR027417
SUPERFAMILY SSF81767 Pre-protein crosslinking domain of SecA 306 428 4.58E-43 IPR036670
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 477 765 6.04E-49 IPR027417
Gene3D G3DSA:3.40.50.300 - 91 476 2.2E-173 IPR027417
Gene3D G3DSA:3.40.50.300 - 477 770 2.3E-84 IPR027417
Gene3D G3DSA:1.10.3060.10 Helical scaffold and wing domains of SecA 772 985 1.6E-54 -
Gene3D G3DSA:3.90.1440.10 - 308 428 2.2E-173 -
SMART SM00957 SecA_DEAD_2 77 462 8.7E-253 IPR011115
SMART SM00958 SecA_PP_bind_2 307 418 2.9E-57 IPR011130
TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 98 972 0.0 IPR000185
ProSiteProfiles PS51196 SecA family profile. 73 771 154.071991 IPR014018
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 326 17.293188 IPR014001
ProSitePatterns PS01312 SecA family signature. 562 577 - IPR020937
PRINTS PR00906 SecA protein signature 240 260 1.4E-71 IPR000185
PRINTS PR00906 SecA protein signature 171 185 1.4E-71 IPR000185
PRINTS PR00906 SecA protein signature 436 453 1.4E-71 IPR000185
PRINTS PR00906 SecA protein signature 133 157 1.4E-71 IPR000185
PRINTS PR00906 SecA protein signature 399 421 1.4E-71 IPR000185
PRINTS PR00906 SecA protein signature 473 486 1.4E-71 IPR000185
PRINTS PR00906 SecA protein signature 187 197 1.4E-71 IPR000185
Hamap MF_01382 Protein translocase subunit SecA [secA]. 73 986 19.233368 IPR000185
MobiDBLite mobidb-lite consensus disorder prediction 990 1032 - -
MobiDBLite mobidb-lite consensus disorder prediction 1017 1032 - -
Gene Ontology
Biological Process:
GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)
Molecular Function:
GO:0005524 (ATP binding)
Cellular Component:
GO:0016020 (membrane)
KEGG Pathway
KO Term:
K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])
Pathway:
ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G01800.1 Albino or Glassy Yellow 1. Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. 0
RefSeq XP_011040217.1 PREDICTED: protein translocase subunit SecA, chloroplastic isoform X1 [Populus euphratica] 0
Swiss-Prot Q9SYI0 Protein translocase subunit SECA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA1 PE=1 SV=2 0
TrEMBL A0A8X7YGQ5 Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_046797 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg10458, jg9019
Aizoaceae Mesembryanthemum crystallinum 2 gene_1077, gene_13408
Amaranthaceae Atriplex hortensis 2 Ah024121, Ah031607
Amaranthaceae Beta vulgaris 2 BVRB_1g010050, BVRB_5g122730
Amaranthaceae Salicornia bigelovii 5 Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ...
Sbi_jg58084
Amaranthaceae Salicornia europaea 2 Seu_jg25704, Seu_jg7111
Amaranthaceae Suaeda aralocaspica 2 GOSA_00004576, GOSA_00020180
Amaranthaceae Suaeda glauca 4 Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ...
gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ...
CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae Pistacia vera 2 pistato.v30007280, pistato.v30039110
Apiaceae Apium graveolens 3 Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae Cocos nucifera 2 COCNU_01G000270, COCNU_15G003170
Arecaceae Phoenix dactylifera 2 gene-LOC103701417, gene-LOC103720122
Asparagaceae Asparagus officinalis 2 AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae Flaveria trinervia 2 Ftri10G32559, Ftri18G11286
Brassicaceae Arabidopsis thaliana 2 AT1G21650.3, AT4G01800.2
Brassicaceae Eutrema salsugineum 2 Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae Brassica nigra 2 BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq03G1867, Ceq06G0547
Casuarinaceae Casuarina glauca 2 Cgl03G2007, Cgl06G0567
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae Dunaliella salina 2 Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae Nitraria sibirica 2 evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae Plantago ovata 2 Pov_00016539, Pov_00021694
Plumbaginaceae Limonium bicolor 2 Lb4G22942, Lb6G30841
Poaceae Echinochloa crus-galli 5 AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ...
gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae Lolium multiflorum 3 gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae Oryza coarctata 3 Oco01G009280, Oco02G009570, Oco22G003520
Poaceae Oryza sativa 2 LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae Paspalum vaginatum 2 gene-BS78_03G139800, gene-BS78_05G097000
Poaceae Puccinellia tenuiflora 2 Pt_Chr0103927, Pt_Chr0603665
Poaceae Sporobolus alterniflorus 6 Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ...
Chr16G010730, Chr17G009810
Poaceae Thinopyrum elongatum 2 Tel3E01G338700, Tel4E01G158600
Poaceae Triticum dicoccoides 4 gene_TRIDC3AG028190, gene_TRIDC3BG032070 ...
gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae Triticum aestivum 6 TraesCS3A02G198400.1, TraesCS3B02G222700.1 ...
TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae Zea mays 2 Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae Zoysia japonica 2 nbis-gene-27238, nbis-gene-6517
Poaceae Zoysia macrostachya 2 Zma_g10242, Zma_g18533
Portulacaceae Portulaca oleracea 3 evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae Posidonia oceanica 2 gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae Kandelia candel 2 evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae Kandelia obovata 2 Maker00011737, Maker00013085
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae Populus euphratica 2 populus_peu27429, populus_peu32459
Solanaceae Lycium barbarum 2 gene-LOC132627149, gene-LOC132644885
Solanaceae Solanum chilense 2 SOLCI001197400, SOLCI003112400
Solanaceae Solanum pennellii 2 gene-LOC107002391, gene-LOC107004481
Tamaricaceae Reaumuria soongarica 2 gene_17557, gene_866
Tamaricaceae Tamarix chinensis 2 TC03G2545, TC07G1717
Zosteraceae Zostera marina 4 Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ...
Zosma07g00120.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.