Basic Information
Locus ID:
populus_peu27393
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 18546351 | 18548327 | - | populus_peu27393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 51,234.31 Da | 56.22 | 77.11 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 102 | 423 | 1.9E-88 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 73 | 458 | 3.29E-127 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 62 | 458 | 1.5E-121 | IPR012334 |
| SMART | SM00710 | pbh1 | 317 | 338 | 4.7 | IPR006626 |
| SMART | SM00710 | pbh1 | 214 | 236 | 5000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 287 | 307 | 6700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 346 | 367 | 640.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 264 | 285 | 130.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 237 | 263 | 49.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 294 | 307 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 67 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_011040652.1 | PREDICTED: polygalacturonase At1g48100-like [Populus euphratica] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A836DMH9 | Polygalacturonase OS=Salix suchowensis OX=1278906 GN=IMY05_014G0092900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology