Basic Information
Locus ID:
populus_peu27356
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 18285653 | 18288434 | - | populus_peu27356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 64,594.50 Da | 65.24 | 53.00 | -1.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 433 | 518 | 1.8E-20 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 534 | 565 | 6.0E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 433 | 518 | 4.8E-31 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 495 | - | - |
| Coils | Coil | Coil | 472 | 492 | - | - |
| Coils | Coil | Coil | 422 | 459 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_011016610.1 | PREDICTED: INO80 complex subunit B-like [Populus euphratica] | 0 |
| TrEMBL | A0A2K1XUA8 | PAPA-1 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G119600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology