Basic Information
Locus ID:
populus_peu27230
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 17359860 | 17363726 | + | populus_peu27230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 33,420.93 Da | 40.77 | 92.01 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 166 | 196 | 0.0043 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 20 | 277 | 1.48E-25 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 276 | 5.1E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 31 | 66 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 197 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 153 | 0.062 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_011033573.1 | PREDICTED: autophagy-related protein 18a-like isoform X1 [Populus euphratica] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5QYI6 | Autophagy-related protein 18a-like OS=Populus alba OX=43335 GN=D5086_0000042190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology