Basic Information
Locus ID:
populus_peu27206
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 17145235 | 17148170 | + | populus_peu27206 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 59,041.87 Da | 43.05 | 100.08 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 6 | 46 | 4.4E-22 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 440 | 459 | 1.5 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 65 | 111 | 3.0E-25 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 287 | 308 | 0.78 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 64 | 494 | 9.81E-33 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 40 | 1.06E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 45 | 530 | 7.7E-154 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 44 | 9.7E-22 | - |
| SMART | SM00367 | LRR_CC_2 | 440 | 464 | 35.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 182 | 208 | 680.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 8 | 49 | 4.1E-6 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 312 | 335 | 210.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 128 | 153 | 90.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 154 | 178 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 103 | 127 | 670.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_011033611.1 | PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Populus euphratica] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | B9I9W7 | F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G134800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology