Basic Information
Locus ID:
populus_peu27139
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 16629184 | 16630224 | + | populus_peu27139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 39,109.27 Da | 50.70 | 83.12 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 205 | 0.078 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 296 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 56 | 302 | 6.78E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 345 | 8.2E-41 | IPR015943 |
| SMART | SM00320 | WD40_4 | 167 | 205 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 164 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 296 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 71 | 112 | 480.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 299 | 9.09833 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 305 | 11.07656 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 283 | 297 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_011033708.1 | PREDICTED: WD repeat-containing protein LWD1 [Populus euphratica] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | B9IA35 | WD_REPEATS_REGION domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G140700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology