Basic Information
Locus ID:
populus_peu27112
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 16357617 | 16369195 | + | populus_peu27112 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 113,103.95 Da | 38.60 | 78.56 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 135 | 412 | 5.5498E-180 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 136 | 448 | 3.6E-94 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 700 | 916 | 3.6E-48 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 454 | 545 | 5.4E-21 | IPR015341 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 452 | 546 | 1.28E-27 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 555 | 991 | 3.92E-113 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 124 | 449 | 5.34E-105 | IPR011330 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 417 | 495 | 3.5E-30 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 135 | 416 | 1.3E-119 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 573 | 697 | 1.8E-25 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 698 | 964 | 3.7E-93 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 496 | 552 | 7.5E-23 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 453 | 527 | 6.1E-21 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_011033760.1 | PREDICTED: alpha-mannosidase-like isoform X1 [Populus euphratica] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6M2EXL0 | Alpha-mannosidase OS=Populus davidiana OX=266767 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology