Basic Information
Locus ID:
populus_peu26667
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 5610516 | 5615233 | - | populus_peu26667 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 63,891.92 Da | 45.11 | 86.46 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 215 | 509 | 2.78128E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 431 | 467 | 0.052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 473 | 509 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 214 | 250 | 7.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 338 | 0.0053 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 208 | 509 | 7.12E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 201 | 511 | 1.9E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 298 | 339 | 5.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 381 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 295 | 4.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 425 | 467 | 0.98 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 421 | 3.2 | IPR001680 |
| SMART | SM00668 | ctlh | 48 | 105 | 0.0018 | IPR006595 |
| SMART | SM00320 | WD40_4 | 211 | 250 | 1.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 470 | 510 | 4.1E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 477 | 509 | 10.706503 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 218 | 251 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 477 | 519 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 304 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 218 | 251 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 48 | 105 | 9.365565 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 299 | 10.126507 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_011035629.1 | PREDICTED: WD repeat-containing protein 26 isoform X2 [Populus euphratica] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6M2EJC2 | CTLH domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology