Basic Information
Locus ID:
populus_peu26601
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 798231 | 808303 | - | populus_peu26601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 88,851.43 Da | 42.23 | 87.92 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 431 | 471 | 1.23872E-16 | - |
| Pfam | PF16135 | Tify domain binding domain | 365 | 415 | 8.7E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 115 | 170 | 6.3E-14 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 432 | 473 | 6.2E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 423 | 476 | 6.38E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 512 | 577 | 2.44E-9 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 515 | 578 | 4.0E-12 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 416 | 513 | 2.8E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 431 | 472 | 1.5E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 519 | 576 | 0.0022 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 429 | 474 | 10.3533 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 432 | 471 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 258 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_011013355.1 | PREDICTED: uncharacterized protein LOC105117403 isoform X1 [Populus euphratica] | 0 |
| Q14839 | Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2WXC7 | PHD-type domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_026759 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology