Basic Information
Locus ID:
populus_peu26392
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 20819761 | 20822906 | + | populus_peu26392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 34,354.20 Da | 67.82 | 76.92 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 242 | 288 | 1.50265E-12 | - |
| Pfam | PF12906 | RING-variant domain | 242 | 288 | 2.9E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 238 | 289 | 2.56E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 304 | 3.3E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 241 | 294 | 4.1E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 234 | 296 | 16.972933 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 73 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011008532.1 | PREDICTED: uncharacterized protein LOC105113880 [Populus euphratica] | 0 |
| TrEMBL | A0A2K1X9I3 | RING-CH-type domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G022900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology