Basic Information
Locus ID:
populus_peu26353
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 20605800 | 20606350 | + | populus_peu26353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 18,091.15 Da | 41.95 | 77.44 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01466 | Skp1 family, dimerisation domain | 106 | 152 | 2.3E-16 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 27 | 87 | 6.9E-10 | IPR016073 |
| SUPERFAMILY | SSF54695 | POZ domain | 28 | 88 | 1.57E-6 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 103 | 151 | 9.03E-9 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 104 | 154 | 8.4E-14 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 21 | 103 | 1.8E-11 | IPR011333 |
| PIRSF | PIRSF028729 | SCF_Skp | 3 | 106 | 8.8E-9 | IPR016897 |
| PIRSF | PIRSF028729 | SCF_Skp | 100 | 155 | 5.0E-12 | IPR016897 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21860.1 | SKP1-like 10. | 0 |
| RefSeq | XP_002323204.4 | SKP1-like protein 14 [Populus trichocarpa] | 0 |
| Q9LSX8 | SKP1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=ASK10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K1X9T9 | SKP1-like protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G028300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30188250, pistato.v30188360 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1697, Ceq01G2096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2295 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g03070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2949 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_18_RagTag.285, evm.TU.Scaffold_5_RagTag.39 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10433 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10441, nbisL1-mrna-9209 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10718, nbisL1-mrna-7776 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000006l.5, add.evm.TU.utg000023l.119 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013746 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20457 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17179, nbisL1-mrna-6866 |
| Salicaceae | Populus euphratica | 2 | populus_peu13958, populus_peu26353 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1128 |