Basic Information
Locus ID:
populus_peu26344
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 20546511 | 20548821 | + | populus_peu26344 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.25 | 34,633.87 Da | 77.94 | 46.56 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 186 | 227 | 1.83683E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 37 | 1.5E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 185 | 227 | 5.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 233 | 3.31E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 233 | 3.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 226 | 8.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 227 | 12.194218 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 297 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_011041353.1 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Populus euphratica] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | B9IHK2 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_016G029300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology